Installation

Software dependencies

scanpy
pandas
numpy
matplotlib
umap-learn
scikit-learn
seaborn
torch
networkx
gudhi
anndata
cmcrameri
pytorch-geometric

Installation

git clone https://github.com/Lin-Xu-lab/COSMOS.git
cd COSMOS

If you would like to import COSMOS in different directories, there is an option
to make it work:
python setup.py install --user &> log

import cosmos