.. COSMOS documentation master file, created by
   sphinx-quickstart on Thu Sep 16 19:43:51 2021.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Installation 
============

Software dependencies
---------------------
.. code-block:: python

   scanpy
   pandas
   numpy
   matplotlib
   umap-learn
   scikit-learn
   seaborn
   torch
   networkx
   gudhi
   anndata
   cmcrameri
   pytorch-geometric

Installation
------------
.. code-block:: python

   git clone https://github.com/Lin-Xu-lab/COSMOS.git
   cd COSMOS

   If you would like to import COSMOS in different directories, there is an option 
   to make it work: 
   python setup.py install --user &> log


.. code-block:: python

   import cosmos